Installing the patch permanently blocked updating it

install.sh chmod +x's update.sh, and git recorded update.sh as 100644 -- so the chmod
was a TRACKED modification, and update.sh refuses to run over a dirty tree. Install
once and you could never update again. The error even told you to 'git checkout -- .',
which just undoes the exec bit so the next install can re-dirty it.

Found on the real box, which had been sitting on v0.4.1 for exactly this reason.

Fixed on both sides: the scripts install.sh chmods are executable in git (so the
chmod is a no-op), and update.sh's dirty check now looks at CONTENT, not mode --
git diff --numstat reports 0 0 for a mode-only change. A test asserts every script in
install.sh's chmod loop is already 100755 in git.

CHANGELOG.md

@@ -66,6 +66,18 @@ worse than no alert, because one day it carries a security fix.
 
 ### Fixed
 
+- **Installing the patch permanently blocked updating it.** `install.sh` does
+  `chmod +x update.sh`, and git recorded `update.sh` as `100644` — so the chmod was a
+  *tracked modification*, and `update.sh` refuses to run over a dirty tree. Install
+  once and you could never update again; the error even told you to run
+  `git checkout -- .`, which just undoes the exec bit so the next install can re-dirty
+  it. A real box sat on an old version for exactly this reason.
+
+  Fixed on both sides: the scripts `install.sh` chmods are now executable in git (so
+  the chmod is a no-op), and `update.sh`'s dirty check now looks at **content**, not
+  file mode — `git diff --numstat` reports `0 0` for a mode-only change. A test
+  asserts every script in `install.sh`'s chmod loop is already `100755` in git.
+
 - **Nested snapshots were broken on TrueNAS 24.10 and 25.04, and had been all
   along.** `SYNC_BLOCK`'s wrapper spelled out the stock signature and forwarded five
   arguments — but those releases declare `restic_backup(middleware, job,

tests/test_docs.py

@@ -94,3 +94,40 @@ class TestTheReadmeStaysAReadme:
         assert "24.10" in text[:text.index("## Install")], (
             "the minimum TrueNAS version must be visible above the install steps"
         )
+
+
+class TestInstallDoesNotDirtyTheCheckout:
+    """install.sh chmod +x's scripts. If git records them as 100644, that chmod is a
+    TRACKED MODIFICATION -- and update.sh refuses to run over a dirty tree.
+
+    So installing once permanently blocked updating, for every user, with a message
+    telling them to `git checkout -- .` (which would just undo the exec bit and let
+    the next install re-dirty it). Found on a real box that had been stuck on an old
+    version for exactly this reason.
+
+    Every script install.sh makes executable must already be executable in git.
+    """
+
+    def test_every_chmodded_script_is_already_executable_in_git(self):
+        import re
+        import subprocess
+
+        with open(os.path.join(ROOT, "install.sh"), encoding="utf-8") as fh:
+            m = re.search(r"^for _exe in (.+?); do", fh.read(), re.M)
+        assert m, "could not find install.sh's chmod loop"
+        scripts = m.group(1).split()
+
+        out = subprocess.run(
+            ["git", "ls-files", "-s", *scripts],
+            cwd=ROOT, capture_output=True, text=True, check=True,
+        ).stdout
+
+        not_exec = [
+            line.split("\t")[-1] for line in out.strip().splitlines()
+            if not line.startswith("100755")
+        ]
+        assert not not_exec, (
+            "install.sh chmod +x's these, but git records them as non-executable — "
+            "so installing dirties the checkout and update.sh then refuses to run:\n  "
+            + "\n  ".join(not_exec)
+        )

update.sh

@@ -136,9 +136,21 @@ fi
 
 # A dirty tree means someone edited or scp'd files in place; merging over that
 # silently loses their changes, or conflicts halfway through.
-if [ -n "$(git status --porcelain --untracked-files=no)" ]; then
+#
+# CONTENT changes only. A mode-only change (100644 -> 100755) is not somebody's work
+# and must not block an update -- and it is not hypothetical: install.sh chmod +x's
+# these very scripts, so on any version where git recorded one as 100644, INSTALLING
+# dirtied the checkout and update.sh then refused to run. Install once, and updating
+# was blocked forever, with an error telling the user to `git checkout -- .` (which
+# merely undoes the exec bit so the next install can re-dirty it). A real box sat on
+# an old version for exactly this reason.
+#
+# `git diff --numstat` reports "0  0  file" for a mode-only change, so anything with a
+# nonzero insert or delete count is a genuine edit.
+_dirty=$(git diff --numstat HEAD -- . | awk '$1 != 0 || $2 != 0 { print $3 }')
+if [ -n "$_dirty" ]; then
     echo "ERROR: the working tree has uncommitted changes:" >&2
-    git status --short --untracked-files=no >&2
+    printf '  M %s\n' $_dirty >&2
     echo "" >&2
     echo "  Refusing to update over them. Commit, stash, or discard them first:" >&2
     echo "    git -C $PATCH_DIR checkout -- ." >&2